Free software developed by members of the Siepel Laboratory

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LASSIE

Linear Allele-Specific Selection InferencE

G-PhoCS

Generalized Phylogenetic Coalescent Sampler

INSIGHT

Inference of Natural Selection from Interspersed Genomically coHerent elemenTs

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PHAST

Phylogenetic Analysis with Space/Time Models

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ARGweaver

Sampling of Ancestral Recombination Graphs

phastweb3d

phastWeb

Web interface for producing conservation scores and identifying conserved elements using phastCons and phyloP

phastweb3d

superEnhancerModelR

Super-enhancer modeling package

Downloadable data sets made available by members of the Siepel Laboratory

LINSIGHT

Statistical model for estimating negative selection on noncoding sequences

fitCons2

Fitcons2 Tracks

LASSIE

LASSIE (Linear Allele-Specific Selection InferencE) Track

fitCons

Fitness consequences of functional annotation

ARGweaver

ARGweaver results for the Complete Genomics data set

Supplemental downloadable data sets for some older projects

Cornell Orthologs

Cornell Orthologs and Positive Selection

Targeted discovery of novel human exons by comparative genomics

Supplemental data for Targeted discovery of novel human exons by comparative genomics

UCSC Genome Browser Mirror

ucsc-logoWe also maintain a public mirror of the UCSC Genome Browser and routinely make data and predictions available as tracks on this browser.  Notice that some of our tracks are not available on the main UCSC browser.